Trans-meQTLs across different cancer types

In trans-meQTL analyses, we identified 965,050 trans-meQTLs at FDR < 0.05 and |r|>=0.3 in 23 cancer types for users to search or browse.

     

e.g., "BLCA"
e.g., "rs4975682"
e.g., "cg25599786"
e.g., "PDCD6"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Methylation probe
Methylation position (hg19)
Gene symbol
Beta
t-stat
r
p-valule
Display
BLCA rs1928729 chr11:50296595 T/C cg15704280 chr7:45808275 SEPT13 -1.03 -24.64 -0.78 8.52E-81 Box Plot
BLCA rs1928731 chr11:50296403 G/A cg15704280 chr7:45808275 SEPT13 -1.02 -24.21 -0.78 5.49E-79 Box Plot
BLCA rs1962576 chr6:66784815 T/G cg15611600 chr13:45563400 KIAA1704;NUFIP1 -1.08 -25.15 -0.79 6.71E-83 Box Plot
BLCA rs200246289 chr11:50285071 CTCTG/C cg15704280 chr7:45808275 SEPT13 -1.03 -24.16 -0.78 8.75E-79 Box Plot
BLCA rs200412711 chr11:50303232 C/A cg15704280 chr7:45808275 SEPT13 -1.03 -24.61 -0.78 1.18E-80 Box Plot
BLCA rs2134520 chr3:125756295 C/G cg26321609 chr3:123680480 CCDC14 -1.11 -24.17 -0.78 7.81E-79 Box Plot
BLCA rs2204194 chr11:50390581 G/A cg15704280 chr7:45808275 SEPT13 -1.02 -24.21 -0.78 5.53E-79 Box Plot
BLCA rs2244835 chr3:125733525 G/C cg26321609 chr3:123680480 CCDC14 -1.17 -26.19 -0.8 3.99E-87 Box Plot
BLCA rs2270983 chr3:125741925 T/G cg26321609 chr3:123680480 CCDC14 -1.13 -25.27 -0.79 2.24E-83 Box Plot
BLCA rs2270984 chr3:125741901 A/G cg26321609 chr3:123680480 CCDC14 -1.18 -26.98 -0.81 2.53E-90 Box Plot
BLCA rs2274240 chr16:68725486 A/G cg04657470 chr2:198365150 HSPE1;HSPD1 1.1 25.49 0.79 2.78E-84 Box Plot
BLCA rs2281850 chr16:68718750 C/T cg04657470 chr2:198365150 HSPE1;HSPD1 -1.07 -25.06 -0.79 1.6E-82 Box Plot
BLCA rs2296405 chr16:68721470 C/T cg04657470 chr2:198365150 HSPE1;HSPD1 -1.09 -26.43 -0.8 4.26E-88 Box Plot
BLCA rs2296406 chr16:68721340 G/A cg04657470 chr2:198365150 HSPE1;HSPD1 1.11 26.59 0.81 9.92E-89 Box Plot
BLCA rs2333407 chr3:125750422 T/A cg26321609 chr3:123680480 CCDC14 -1.18 -25.38 -0.79 7.81E-84 Box Plot